{"key":"3451ac42-1b9d-4eef-85c8-d218fcefcb56","installationKey":"fb5e4c2a-579c-434b-a446-3a665dd732ad","publishingOrganizationKey":"ab733144-7043-4e88-bd4f-fca7bf858880","doi":"10.15468/vd5vy9","external":false,"numConstituents":0,"type":"SAMPLING_EVENT","title":"Metagenomics insights into Phylogenetic and Functional Diversity of Halophilic Communities inhabiting solar saltern in North Sinai,  Egypt","description":"<p>In tropical and subtropical areas around the world, Solar Salterns are artificial shallow\nponds used to manufacture halite (NaCl) from seawater. Multi-pond systems are\ncommonly used to make them. Saline environments ranging from intermediate to\nhyper-saline water (brine) and sediment, the later are characteristic of solar saltern in\nNorth Sinai. Metagenomics by 16S rRNA Illumina amplicon sequencing and\nbioinformatical analysis was used to explore the microbial diversity of Solar Saltern\nand the halophilic communities were characterized. A total of 237,899 (brine) and\n59,680 (sediment) reads were collected. A microbiome featuring Archaea was\ndiscovered using 16S rRNA sequencing (20% from brine and 0.28% from sediment)\nThe domain Archaea (20%) comprising phylum Euryarchaeota (19.9%) was the most\nabundant, followed by Crenarchaeota (0.02%) and Thaumarchaeota (0.01%), while\ndomain Eubacteria (13.37%) included phylum Proteobacteria (4.5%), Bacteroidetes\n(3.7%), Actinobacteria (3.4%), and Firmicutes (3.3%). Eukarya was (1.68%) and\nunclassified (64.23%). In sediment Bacteria and Eukarya diversity higher than those\nin brine was (47.8%) and (3.38%) respectively, domain Archaea was (0.28%) and\nunclassified (48.23%). The study of halophilic microorganisms in solar saltern sheds\nlight on species that contribute to the ecosystem&#39;s biogeochemical cycles. This study\npresents a first snapshot for halophilic communities in a hypersaline environment in\nnorth Sinai.</p>","language":"eng","homepage":"https://www.ebi.ac.uk/metagenomics/studies/MGYS00006039","citation":{"text":"MGnify (2022). Metagenomics insights into Phylogenetic and Functional Diversity of Halophilic Communities inhabiting solar saltern in North Sinai,  Egypt. 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Multi-pond systems are\ncommonly used to make them. Saline environments ranging from intermediate to\nhyper-saline water (brine) and sediment, the later are characteristic of solar saltern in\nNorth Sinai. Metagenomics by 16S rRNA Illumina amplicon sequencing and\nbioinformatical analysis was used to explore the microbial diversity of Solar Saltern\nand the halophilic communities were characterized. A total of 237,899 (brine) and\n59,680 (sediment) reads were collected. A microbiome featuring Archaea was\ndiscovered using 16S rRNA sequencing (20% from brine and 0.28% from sediment)\nThe domain Archaea (20%) comprising phylum Euryarchaeota (19.9%) was the most\nabundant, followed by Crenarchaeota (0.02%) and Thaumarchaeota (0.01%), while\ndomain Eubacteria (13.37%) included phylum Proteobacteria (4.5%), Bacteroidetes\n(3.7%), Actinobacteria (3.4%), and Firmicutes (3.3%). Eukarya was (1.68%) and\nunclassified (64.23%). In sediment Bacteria and Eukarya diversity higher than those\nin brine was (47.8%) and (3.38%) respectively, domain Archaea was (0.28%) and\nunclassified (48.23%). The study of halophilic microorganisms in solar saltern sheds\nlight on species that contribute to the ecosystem's biogeochemical cycles. This study\npresents a first snapshot for halophilic communities in a hypersaline environment in\nnorth Sinai.","methodSteps":["Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/5.0"]},"countryCoverage":[],"collections":[],"dataDescriptions":[],"dataLanguage":"eng","pubDate":"2022-07-25T00:00:00.000+00:00","maintenanceUpdateFrequency":"UNKOWN","maintenanceDescription":"","license":"http://creativecommons.org/licenses/by/4.0/legalcode","dwca":{"coreType":"http://rs.tdwg.org/dwc/terms/Event","extensions":["http://rs.tdwg.org/dwc/terms/Occurrence"],"modified":"2026-10-12T03:37:16.159+00:00"},"category":["eDNA"],"approximateCounts":{"occurrenceCount":61}}